Mihai Pop
Mihai Pop
Mihai Pop is an MPower Professor of computer science with a joint appointment in the University of Maryland Institute for Advanced Computer Studies (UMIACS). Pop is co-director of the UMD Center for Excellence in Microbiome Sciences and was the director of UMIACS from 2018–2025.
Pop's research covers several areas of bioinformatics, primarily related to the development of computational algorithms for analyzing biological data generated through high-throughput experimental techniques, such as sequencing technologies. His research is driven by the belief that there is a strong connection between computational and biological research, computation being not just a simple tool in the hands of biologists, but an integral component of current biological research.
Latest Papers
Sequencing the ocular surface microbiome: a review of methodological practices and considerations
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Frontiers in Ophthalmology
Author(s): Shiva Mehravaran, Mihai Pop
UMD Author(s): Mihai Pop
Challenges and Opportunities in Analyzing Cancer-Associated Microbiomes
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Cancer Research
Author(s): Minghao Chia, Mihai Pop, Steven L. Salzberg, et. al
UMD Author(s): Mihai Pop
Reference-guided assembly of metagenomes with MetaCompass
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Cell Reports Methods
Author(s): Tu Luan, Victoria P. Cepeda-Espinoza, Bo Liu, et. al
UMD Author(s): Mihai Pop
Challenges and Opportunities in Analyzing Cancer-Associated Microbiomes.
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Cancer Research
Author(s): Chia M, Pop M, Salzberg SL, et. al
UMD Author(s): Mihai Pop
Analysis of metagenomic data
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Nature Reviews Methods Primers
Author(s): Shaopeng Liu, Judith S. Rodriguez, Viorel Munteanu, et. al
UMD Author(s): Mihai Pop
Biological databases in the age of generative artificial intelligence
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Bioinformatics Advances
Author(s): Mihai Pop, Teresa K Attwood, Judith A Blake, et. al
UMD Author(s): Mihai Pop
Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing
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Nature methods
Author(s): Ekaterina Kazantseva, Ataberk Donmez, Maria Frolova, et. al
UMD Author(s): Mihai Pop
Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes
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PLOS Computational Biology
Author(s): Seth Commichaux, Andre Kahles, Tu Luan, et. al
UMD Author(s): Mihai Pop
Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates
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BMC genomics
Author(s): Tu Luan, Seth Commichaux, Maria Hoffmann, et. al
UMD Author(s): Mihai Pop
The impact of transitive annotation on the training of taxonomic classifiers
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Frontiers in microbiology
Author(s): Harihara Subrahmaniam Muralidharan, Noam Y. Fox, Mihai Pop
UMD Author(s): Mihai Pop


