Rob Patro
Rob Patro
Graduate Program Affiliations
- Bioinformatics & Computational Biology (BIOI)
- Biological Sciences (BISI): Computational Biology, Bioinformatics, and Genomics (CBBG)
- Computer Science (CMSC)
Research Areas
Algorithms and Theory, Bioinformatics and Computational Biology, High Performance and Scientific Computing
Latest Papers
Kaminari: a frugal colored index for approximate k-mer queries
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
UMD Author(s): Rob Patro
kache-hash: A dynamic, concurrent, and cache-efficient hash table for streaming k-mer operations
Author(s): Jamshed Khan, Rob Patro, Prashant Pandey
UMD Author(s): Rob Patro
Optimizing sparse and skew hashing: faster k-mer dictionaries
Author(s): Giulio Ermanno Pibiri, Rob Patro
UMD Author(s): Rob Patro
mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing
Author(s): Rob Patro, Siddhant Bharti, Prajwal Singhania, et. al
UMD Author(s): Rob Patro
Tree-based differential testing using inferential uncertainty for RNA-seq
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Genome Research
Author(s): Noor Pratap Singh, Euphy Y. Wu, Jason Fan, et. al
UMD Author(s): Rob Patro
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignment
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Bioinformatics
Author(s): Noor Pratap Singh, Jamshed Khan, Rob Patro
UMD Author(s): Rob Patro
Oarfish: enhanced probabilistic modeling leads to improved accuracy in long read transcriptome quantification
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Bioinformatics
Author(s): Zahra Zare Jousheghani, Rob Patro
UMD Author(s): Rob Patro
QCatch: A framework for quality control assessment and analysis of single-cell sequencing data
Author(s): Yuan Gao, Dongze He, Rob Patro
UMD Author(s): Rob Patro, Yuan Gao
Kaminari: a resource-frugal index for approximate colored k-mer queries
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
UMD Author(s): Rob Patro
Kaminari: a resource-frugal index for approximate colored k -mer queries
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
UMD Author(s): Rob Patro
