Rob Patro
Rob Patro
Graduate Program Affiliations
- Bioinformatics & Computational Biology (BIOI)
- Biological Sciences (BISI): Computational Biology, Bioinformatics, and Genomics (CBBG)
- Computer Science (CMSC)
Research Areas
Algorithms and Theory, Bioinformatics and Computational Biology, High Performance and Scientific Computing
Latest Papers
Highly Constrained Kinetic Models for Single-Cell Gene Expression Analysis
Author(s): Hyeon Jin Cho, Christopher Herrick Bohrer, Pawel Trzaskoma, et. al
UMD Author(s): Rob Patro, Daniel Larson
Kaminari: a frugal colored index for approximate k-mer queries
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
UMD Author(s): Rob Patro
kache-hash: A dynamic, concurrent, and cache-efficient hash table for streaming k-mer operations
Author(s): Jamshed Khan, Rob Patro, Prashant Pandey
UMD Author(s): Rob Patro
Optimizing sparse and skew hashing: faster k-mer dictionaries
Author(s): Giulio Ermanno Pibiri, Rob Patro
UMD Author(s): Rob Patro
mim: A lightweight auxiliary index to enable fast, parallel, gzipped FASTQ parsing
Author(s): Rob Patro, Siddhant Bharti, Prajwal Singhania, et. al
UMD Author(s): Rob Patro
QCatch: A framework for quality control assessment and analysis of single-cell sequencing data
Author(s): Yuan Gao, Dongze He, Rob Patro
UMD Author(s): Rob Patro
Kaminari: a resource-frugal index for approximate colored k-mer queries
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
UMD Author(s): Rob Patro
Kaminari: a resource-frugal index for approximate colored k -mer queries
Author(s): Victor Levallois, Yoshihiro Shibuya, Bertrand Le Gal, et. al
UMD Author(s): Rob Patro
Faster and Scalable Parallel External-Memory Construction of Colored Compacted de Bruijn Graphs with Cuttlefish 3
Author(s): Jamshed Khan, Laxman Dhulipala, Prashant Pandey, et. al
UMD Author(s): Rob Patro
Fast and Scalable Parallel External-Memory Construction of Colored Compacted de Bruijn Graphs with Cuttlefish 3
Author(s): Jamshed Khan, Laxman Dhulipala, Rob Patro
UMD Author(s): Rob Patro
