Wade Winkler

Portrait of Wade Winkler

Wade Winkler

Cell Biology & Molecular Genetics Professor

Teaching

  • Principles of Microbiology (BSCI283)
  • Microbial Genetics (BSCI412)
  • Teaching Science and Professional Development (BISI701)

Graduate Program Affiliations


Research Interests

All organisms regulate the expression of their genes. These genetic regulatory processes are often responsive to specific chemical or physical cues. The overarching goal of my laboratory is to discover new classes of genetic regulatory elements and reveal their underlying molecular mechanisms, including their integration of physiological signals. More specifically, we investigate bacterial regulatory RNAs and the proteins that associate with them. Over the years, my lab has investigated many different riboswitches that respond to a range of cellular signals, including uncharged tRNAs, metabolites, metal ions, and RNA-binding proteins. My lab has also discovered novel small RNAs and long 5' leader regions in Bacillus subtilis and other Gram-positive bacteria. In addition, we study RNA degradation pathways. Together, these research endeavors provide key information about the biology of bacterial pathogens and will continue to inspire the development of new synthetic biology tools. 


Education

  • Ph.D., The Ohio State University, 2002
  • Postdoctoral Training, Yale University, 2004

All Publications

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BISI Concentration Areas

Molecular and Cellular Biology

Latest Papers

Bacillus velezensis LoaP promotes antitermination by antagonizing NusA

| mBio
Author(s): Madison D. Jermain, Thao Tran, Conor C. Jenkins, et. al
UMD Author(s): Wade Winkler


Functional analyses of bacterial NanoRNase B proteins reveals defining features of this enzyme family

| Nucleic Acids Research
Author(s): Tanner M Myers, Andrew A Burnim, Madison D Jermain, et. al
UMD Author(s): Vincent Lee, Wade Winkler, Xiaofang Jiang


Structural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria

| Nucleic Acids Research
Author(s): Sofia Mortensen, Stanislava Kuncová, Justin D Lormand, et. al
UMD Author(s): Vincent Lee, Wade Winkler


Bacillus subtilis NrnB is expressed during sporulation and acts as a unique 3′-5′ exonuclease

| Nucleic Acids Research
Author(s): Tanner M Myers, Shakti Ingle, Cordelia A Weiss, et. al
UMD Author(s): Vincent Lee, Wade Winkler


NrnA is a 5′-3′ exonuclease that processes short RNA substrates in vivo and in vitro

| Nucleic Acids Research
Author(s): Cordelia A Weiss, Tanner M Myers, Chih Hao Wu, et. al
UMD Author(s): Vincent Lee, Wade Winkler


Nano-RNases: oligo- or dinucleases?

| FEMS Microbiology Reviews
Author(s): Vincent T Lee, Holger Sondermann, Wade C Winkler
UMD Author(s): Vincent Lee, Wade Winkler


In Vitro Analysis of Bacterial Microcompartments and Shell Protein Superstructures by Confocal Microscopy


Author(s): Daniel S. Trettel, Wade C. Winkler
UMD Author(s): Wade Winkler


Chemical probing provides insight into the native assembly state of a bacterial microcompartment

| Structure
Author(s): Daniel S. Trettel, William Resager, Beatrix M. Ueberheide, et. al
UMD Author(s): Wade Winkler


Special Issue: Regulating with RNA in Microbes

| Molecular Microbiology
Author(s): Kai Papenfort, Sarah A. Woodson, Ruth A. Schmitz, et. al
UMD Author(s): Wade Winkler


An autoinhibitory mechanism controls RNA‐binding activity of the nitrate‐sensing protein NasR

| Molecular Microbiology
Author(s): Jonathan R. Goodson, Christopher Zhang, Daniel Trettel, et. al
UMD Author(s): Wade Winkler